Welcome to the Aquacomputer forum
I have an Aquaduct 360 and AFAIK there are no tube meters in the unit. So you will not see anything on the Aquasuite for water level. There is a little ball on one of the sides that shows you have flow, but just looking through the top will verify if you have flow or not.
Did you make sure that your flow meter is enabled in the Aquaero? Do you have the English instructions for this unit? Do you have the latest firmware burned to your Aquaduct?
Do you have something in the BIOS that restarts your computer according to the last stage it was in? What OS are you using. I seem to recall that there is some kind of jumper setting either on the Aquaero or the circuit board that has something to do with this.