Just be sure to go to the fans tab, advanced setting and make sure PWM is checked and you shouldn't have a problem. As stated above use the included Y-splitter and send the second feed to ch.3 or another channel on the aquero and it will show you both rpm's. You will be able to control both rpms simultaneously via making adjustments to ch.4
I am running a pair of MCP35x2's in my build if you have any questions just ask! Great pumps!
thanks, so it will be shown as a fan? But than you can control the 2 pumps simultaneously and read the rpm, great.
Swiftech has a PWM splitter cable that will allow you to connect both pumps together for control by the fan 4 header and it has a seperate 3 pin header that connects to one of the other fan headers and will give the RPM's of the second pump.
http://www.swiftech.com/PWMsplittercable.aspx