Should i understand these devices have a built in temp sensor, and to use it, one would need to connect these 2 pins with one of the 8x2pin sensor connectors on the aquaaero ?
No, all connectors marked as "Temp" are for 10Ω temp sensor.
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Should a devices have a built in temp sensor (or one connected to the Temperature connector) it can by used for this devices naturally and at the aquaaero over aquabus.
PS: Is your new System already running?