It would help if you could supply the wiring scheme you used and the pinout of the LED.
What I have figured out here is that the Red and the Amber LED comes on, but not the green LED. If power is applied to the red wire you get the Red LED on. If you apply power to both the red and blue wires you will get the Amber LED to come on. What I think is going on here is that the Aquaero does not fully turn off the power going to the Red wire and thus the Green LED will not light.
I want red color when it starts up, amber color during normal operation, and green color when I reach an over temp situation. I know this is possible somehow because the Aquaero video showed a tri-color LED in operation (Green => Amber => Red).
Which brings me back to my original question: Will the Aquasuite software allow me to specify a specific range of temps for both LED's so that all voltage stops to one LED completely?
** note: When I speak of red, blue, and black wires these are the colors coming off a standard AC two LED light assembly.