The timeline idea seem really great, but it would imply a total overhaul of the Aquasuite software, and I'm fairly certain that won't happen anytime soon...
What I had in mind was more a way to link several "LED controllers" between each other. Maybe just an option to tell that the controller is part of a sequence (a checkbox?), with a previous controller dropdown list of some sort.
When you check the box that tells it is part of a sequence, the only available option is a list of all the existing "LED controllers" where you select which one is the previous in the chain.
And then the controller automatically takes all the parameters from the previous linked controller, and just add more LEDs to the effect.
That way you set the effect on the first controller of the chain, and just link more controllers after to form the chain.
EDIT: even more simple, I made screenshot concept :
Select a controller, for example "Strip front" on the first output of the Farbwerk 360.
With the "Strip front" controller selected, click the "Chain" button right next to "Multi-assign" button.
It create a chained element, called "LED Controller 15" in that example, that you can put in any of the four output of the Farbwerk 360, with any LEDs length.
No option whatsoever, it just says it's chained with the previous controller "Strip front". They both share the same effect setup, the "Snowfall" effect is just chained from the first to that second controller.
From here you can create a third controller by selecting the "Chain" button again to have a chain on three controller, etc.
From a user standpoint it would be very easy to use and to understand.