I'm a bit confused what you are asking here. What exact model of AMS is it? Do you mean you have a flow meter you want to connect to the AMS (what model), or that the AMS has a flow meter in it?
OK, I think I see what you are talking about now. The AMS compact 600 with flow meter? I have not noticed that model before, its interesting, if only it had a different pump.
It seems to me like to get the flow meter readout into Aquasuite you need to have the USB connected, or to connect the flow meter output direct to the Aquaero.